{"id":146600,"date":"2025-08-05T07:27:36","date_gmt":"2025-08-05T07:27:36","guid":{"rendered":"https:\/\/immunomart.com\/?page_id=146600"},"modified":"2025-08-05T07:42:18","modified_gmt":"2025-08-05T07:42:18","slug":"frequently-asked-questions-for-plasmid-dna-extraction","status":"publish","type":"page","link":"https:\/\/immunomart.com\/frequently-asked-questions-for-plasmid-dna-extraction\/","title":{"rendered":"Frequently Asked Questions For Plasmid DNA Extraction"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-page\" data-elementor-id=\"146600\" class=\"elementor elementor-146600\" data-elementor-post-type=\"page\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-bcd595f elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"bcd595f\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-2c6deaa\" data-id=\"2c6deaa\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-7798c5c elementor-widget elementor-widget-image\" data-id=\"7798c5c\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"image.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<img fetchpriority=\"high\" decoding=\"async\" width=\"261\" height=\"256\" src=\"https:\/\/immunomart.com\/wp-content\/uploads\/2025\/08\/FAQs-1.png\" class=\"attachment-full size-full wp-image-146593\" alt=\"-\" srcset=\"https:\/\/immunomart.com\/wp-content\/uploads\/2025\/08\/FAQs-1.png 261w, https:\/\/immunomart.com\/wp-content\/uploads\/2025\/08\/FAQs-1-150x147.png 150w, https:\/\/immunomart.com\/wp-content\/uploads\/2025\/08\/FAQs-1-64x63.png 64w\" sizes=\"(max-width: 261px) 100vw, 261px\" title=\"\">\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-9547799\" data-id=\"9547799\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-2d512d9 elementor-widget elementor-widget-heading\" data-id=\"2d512d9\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h1 class=\"elementor-heading-title elementor-size-default\">Frequently Asked Questions for Plasmid DNA Extraction<\/h1>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-e965f6a elementor-widget-divider--view-line elementor-widget elementor-widget-divider\" data-id=\"e965f6a\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"divider.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"elementor-divider\">\n\t\t\t<span class=\"elementor-divider-separator\">\n\t\t\t\t\t\t<\/span>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-d0c147d elementor-widget elementor-widget-accordion\" data-id=\"d0c147d\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"accordion.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"elementor-accordion\">\n\t\t\t\t\t\t\t<div class=\"elementor-accordion-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2181\" class=\"elementor-tab-title\" data-tab=\"1\" role=\"button\" aria-controls=\"elementor-tab-content-2181\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon elementor-accordion-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-closed\"><svg class=\"e-font-icon-svg e-fas-plus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H272V64c0-17.67-14.33-32-32-32h-32c-17.67 0-32 14.33-32 32v144H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h144v144c0 17.67 14.33 32 32 32h32c17.67 0 32-14.33 32-32V304h144c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-opened\"><svg class=\"e-font-icon-svg e-fas-minus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h384c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"elementor-accordion-title\" tabindex=\"0\">Why Eluted plasmid appeared degraded after storage for a period of time?<\/a>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2181\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"1\" role=\"region\" aria-labelledby=\"elementor-tab-title-2181\"><p>When Degradation Appears, This Indicates That Nuclease The Possible Presence Of Nuclease In The Eluted Plasmid. There Are Several Things To Do: 1) Nuclease Cannot Be Completely Washed Off Especially When End+ E. Coli Host Strain Is Used. Use End-Strain If Possible. 2) Wash The Column Twice With WF Buffer. 3) Use TE Buffer For Plasmid Elution As EDTA Can Inhibit Nuclease Activity. Store Eluted DNA At -20\u02daC When Not Used.<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-accordion-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2182\" class=\"elementor-tab-title\" data-tab=\"2\" role=\"button\" aria-controls=\"elementor-tab-content-2182\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon elementor-accordion-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-closed\"><svg class=\"e-font-icon-svg e-fas-plus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H272V64c0-17.67-14.33-32-32-32h-32c-17.67 0-32 14.33-32 32v144H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h144v144c0 17.67 14.33 32 32 32h32c17.67 0 32-14.33 32-32V304h144c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-opened\"><svg class=\"e-font-icon-svg e-fas-minus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h384c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"elementor-accordion-title\" tabindex=\"0\">Why is TB (terrific broth) not an ideal medium for culturing to prepare plasmids?<\/a>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2182\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"2\" role=\"region\" aria-labelledby=\"elementor-tab-title-2182\"><p>It Is Not Recommended To Use Rich Medium Such As TB Or 2X TY For Most Commonly Used Plasmids, Especially High-Copy Number Plasmids. Although Rich Medium Have The Obvious Advantage Of Producing More Bacteria, High Level Of Cell Biomass Reduces The Yield And Quality Of Plasmids. If Rich Medium Must Be Used, Please Reduce The Culture Volume To Match The Suitable Range Of Cell Biomass. If The Culture Used Too Much, Alkaline Lysis Will Be Inefficient To Lower The Yield Of Extracted Plasmids. Furthermore, The Excessive Viscosity Of The Lysate Will Require Vigorous Mixing To Result In Shearing Of Genomic DNA And Subsequent Contamination Of Extracted Plasmids. High Level Of Protein And Polysaccharide Will Usually Be Carried Out With Plasmids To Result In Bad Quality Of Extracted Plasmids. To Incubate Bacterial Cells With Rich Medium Overnight (About 16 Hours) Is Not Recommended. Most Of Antibiotics Will Be Ran Out In 8 Hours. The Culture Will Lose The Selection Of The Antibiotic And Reduce The Yield Of Plasmids In The Bacterial Cells. Incubation With Rich Medium For Long Time, Especially Longer Than 10 Hours, Will Produce Large Amount Of The Dead Cells. Sampling Too Many Dead Cells Will Provide Low Yield And Bad Quality Of Plasmids Extracted.<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-accordion-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2183\" class=\"elementor-tab-title\" data-tab=\"3\" role=\"button\" aria-controls=\"elementor-tab-content-2183\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon elementor-accordion-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-closed\"><svg class=\"e-font-icon-svg e-fas-plus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H272V64c0-17.67-14.33-32-32-32h-32c-17.67 0-32 14.33-32 32v144H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h144v144c0 17.67 14.33 32 32 32h32c17.67 0 32-14.33 32-32V304h144c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-opened\"><svg class=\"e-font-icon-svg e-fas-minus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h384c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"elementor-accordion-title\" tabindex=\"0\">Plasmid DNA yield obtained by using Immunoport's Mini PlusTM Plasmid DNA Extraction System is not very consistent. For the same plasmid, why do we sometimes obtain a lower yield?<\/a>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2183\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"3\" role=\"region\" aria-labelledby=\"elementor-tab-title-2183\"><p>There Are Several Possible Reasons Accounting For The Lower Plasmid Yield Obtained: 1) Bacterial Culture Did Not Grow Well, Thus Resulting In A Lower Cell Density. To Ensure A Well-Grown Culture, Always Inoculate Bacterial Cells From A Freshly Streaked Plate And Grow Cells In The Presence Of The Required Antibiotic(S). Ensure That Bacteria Have Grown Well After Overnight Culture And Attained An OD600 More Than 1, Meanwhile Do Not Let The Culture Grow More Than 16 Hours, Bacteria May Enter Death Phase And Plasmids In Cells Start To Be Degraded. 2) Do Not Use More Than 5 Ml Of Culture For One Preparation. Sometimes When The Culture Is Too Dense, Cells Collected From A 5 Ml Culture Cannot Be Completely Lysed. Incomplete Cell Lysis Will Lead To A Lower Yield Of Plasmid. 3) If DdH2O Of PH Less Than 7 Is Used For DNA Elution, Lower Efficiency Of Plasmid Elution Will Be Resulted. 4) When A More Concentrated Plasmid DNA Solution Is Desired, 30 Ml Of Elution Buffer Is Suggested. However, In Comparison With Using 50 Ml Elution Buffer, There Is About 40% Of Plasmid Cannot Be Eluted When 30 Ml Is Used. Therefore, No Less Than 30 MlOf Elution Solution Should Be Used. 5) Make Sure That Elution Buffer Is Absorbed Into The Membrane And To Stand The Column For 1-2 Minutes Before Centrifugation To Elute DNA. If The Buffer Still Retains On The Membrane Surface, Plasmid DNA Will Not Be Eluted Due To Lack Of Contact With Buffer. In This Case Pulse Centrifugation Of The Column For 1-2 Seconds (Do NOT Over-Centrifuge) Can Help Permeation Of The Buffer Into The Membrane. 6) Large Plasmid Is Eluted Less Readily Than Small Plasmid. When A Plasmid Is Larger Than 10 Kb, Use Elution Solution Preheated To 70\u02daC.<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-accordion-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2184\" class=\"elementor-tab-title\" data-tab=\"4\" role=\"button\" aria-controls=\"elementor-tab-content-2184\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon elementor-accordion-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-closed\"><svg class=\"e-font-icon-svg e-fas-plus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H272V64c0-17.67-14.33-32-32-32h-32c-17.67 0-32 14.33-32 32v144H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h144v144c0 17.67 14.33 32 32 32h32c17.67 0 32-14.33 32-32V304h144c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-opened\"><svg class=\"e-font-icon-svg e-fas-minus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h384c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"elementor-accordion-title\" tabindex=\"0\">Why is it the eluted plasmid cannot be cut by restriction enzymes properly?<\/a>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2184\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"4\" role=\"region\" aria-labelledby=\"elementor-tab-title-2184\"><p>It Is Possible That Salt Residue In Buffers Or Ethanol Residue In WS Buffer Is Not Removed Completely And Thus Affects The Downstream Reaction. In Case Of Salt Residue, Wash The Column Twice With WS Buffer. In Case Of Ethanol Residue, After Washing With WS Buffer, Make Sure That The Flow-Through Is Discarded And Centrifuge The Column At Full Speed For 3 Minutes. If Necessary, To Centrifuge For A Few Minutes More To Ensure Complete Removal Of Ethanol. Another Reason Is That Plasmid Is Denatured. Denaturation Happens If Incubation In MX2 Buffer Has Gone For Too Long Time. This Can Be Visualized During Electrophoresis That A Band Migrates Faster Than The Supercoiled Form. After MX2 Buffer Is Added, Do NOT Incubate For More Than 5 Minutes.<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-accordion-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2185\" class=\"elementor-tab-title\" data-tab=\"5\" role=\"button\" aria-controls=\"elementor-tab-content-2185\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon elementor-accordion-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-closed\"><svg class=\"e-font-icon-svg e-fas-plus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H272V64c0-17.67-14.33-32-32-32h-32c-17.67 0-32 14.33-32 32v144H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h144v144c0 17.67 14.33 32 32 32h32c17.67 0 32-14.33 32-32V304h144c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-opened\"><svg class=\"e-font-icon-svg e-fas-minus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h384c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"elementor-accordion-title\" tabindex=\"0\">Why do we get eluted plasmid contaminated with RNA?<\/a>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2185\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"5\" role=\"region\" aria-labelledby=\"elementor-tab-title-2185\"><p>Make Sure That RNase A Is Added Into MX1 Buffer. Store The MX1 Buffer At 4\u02daC. If RNase A-Added MX1 Buffer Is Not Properly Stored At 4\u02daC Or Has Been Stored For A Long Time, E.G., More Than 6 Months, RNase A Activity May Have Been Reduced, Thus Not Being Able To Degrade RNA Completely. In This Case, Fresh RNase A Has To Added Into MX1 Buffer With Final Concentration Of 50 Mg\/Ml. Again, Store The Buffer At 4\u02daC.<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-accordion-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2186\" class=\"elementor-tab-title\" data-tab=\"6\" role=\"button\" aria-controls=\"elementor-tab-content-2186\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon elementor-accordion-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-closed\"><svg class=\"e-font-icon-svg e-fas-plus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H272V64c0-17.67-14.33-32-32-32h-32c-17.67 0-32 14.33-32 32v144H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h144v144c0 17.67 14.33 32 32 32h32c17.67 0 32-14.33 32-32V304h144c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-opened\"><svg class=\"e-font-icon-svg e-fas-minus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h384c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"elementor-accordion-title\" tabindex=\"0\">Why is there genomic DNA copurified with the plasmid?<\/a>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2186\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"6\" role=\"region\" aria-labelledby=\"elementor-tab-title-2186\"><p>When Genomic DNA Is Found In The Eluant, It Means That Genomic DNA Has Been Sheared During Cell Lysis Process. After MX2 Buffer Is Added, Ensure That Mixing Is Done Very Gently To Prevent Genomic DNA Shearing. If Genomic DNA Is Sheared, Genomic DNA Fragments Will Get Into The Lysate And Copurified With Plasmid.<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-accordion-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2187\" class=\"elementor-tab-title\" data-tab=\"7\" role=\"button\" aria-controls=\"elementor-tab-content-2187\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon elementor-accordion-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-closed\"><svg class=\"e-font-icon-svg e-fas-plus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H272V64c0-17.67-14.33-32-32-32h-32c-17.67 0-32 14.33-32 32v144H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h144v144c0 17.67 14.33 32 32 32h32c17.67 0 32-14.33 32-32V304h144c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-opened\"><svg class=\"e-font-icon-svg e-fas-minus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h384c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"elementor-accordion-title\" tabindex=\"0\">Can Mini PlusTM plasmid DNA extraction system be applied on Gram(+) bacteria?<\/a>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2187\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"7\" role=\"region\" aria-labelledby=\"elementor-tab-title-2187\"><p>This System Is Mainly Designed To Extract Plasmid DNA From Gram(-) Bacteria Such As E. Coli. Gram(+) Bacteria Have Thicker Cell Wall So Cell Lysis Buffers Provided In The Kit Does Not Lyse Them Readily. However, Extraction Of Plasmid DNA From Gram(+) Bacteria Can Still Be Achieved With Additional Treatment. After Resuspending The Pelleted Bacterial Cells In MX1 Buffer, Add Lysozyme To Give A Final Concentration Of 3 To 5 Mg\/Ml. Incubate The Suspension At 37\u02daC For 30-60 Minutes (Or For A Shorter Time When Use 5 Mg\/Ml Lysozyme). This Treatment Weakens The Cell Wall Of The Gram(+) Bacteria. Then Add MX2, And Follow The Rest Of The Protocol. For Certain Gram(+) Bacteria With Thin Cell Wall, Such As Lactobacillus, Applying Of Double Amount Of MX1, MX2, And MX3 Buffer May Have Been Enough To Lyse The Cells. Yet, We Still Recommend Treating Gram(+) Bacteria With Lysozyme To Facilitate Cell Lysis.<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-accordion-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2188\" class=\"elementor-tab-title\" data-tab=\"8\" role=\"button\" aria-controls=\"elementor-tab-content-2188\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon elementor-accordion-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-closed\"><svg class=\"e-font-icon-svg e-fas-plus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H272V64c0-17.67-14.33-32-32-32h-32c-17.67 0-32 14.33-32 32v144H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h144v144c0 17.67 14.33 32 32 32h32c17.67 0 32-14.33 32-32V304h144c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-accordion-icon-opened\"><svg class=\"e-font-icon-svg e-fas-minus\" viewBox=\"0 0 448 512\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\"><path d=\"M416 208H32c-17.67 0-32 14.33-32 32v32c0 17.67 14.33 32 32 32h384c17.67 0 32-14.33 32-32v-32c0-17.67-14.33-32-32-32z\"><\/path><\/svg><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"elementor-accordion-title\" tabindex=\"0\">Why does Immunoport's Mini Plus Plasmid DNA Extraction System require two washings with two types of wash buffers (WN and WS Buffer) while kits of some other brands (such as GFX Micro Plasmid Prep Kit from Amersham Pharmacia Biotech) just requires one washing?<\/a>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2188\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"8\" role=\"region\" aria-labelledby=\"elementor-tab-title-2188\"><p>WN Buffer Is Used To Remove Protein Residues And Degraded RNA Residues On The Membrane And WS Buffer Is Used To Remove Salt Residues On The Membrane. When A Small Volume Of Bacterial Culture (Less Than 3 Ml) Is Used, The Lysate Resulted Is Usually Not Rich In Protein Contaminants And So Washing With Only WS Buffer Is Already Enough To Result In Plasmid Pure Enough For DNA Sequencing And Other Applications. As One May Notice That When A Product Kit Only Provides One Wash Buffer, It Only Allows Purification Of Plasmid DNA From A Culture Of Volume Less Than 3 Ml. It Is Because One Wash Buffer Is Not Enough To Remove Contaminants From A Higher Volume Of Culture. This Kind Of Product Only Allows Isolation Of High Copy Plasmid As A Small Volume Of Culture Is Used. It Cannot Be Used To Isolate Low Copy Plasmid As A Higher Volume Of Culture Is Required. Moreover, The Drawback Of Using Only One Wash Buffer Is That It Cannot Remove Degraded RNA Bound To The Membrane. Removal Of RNA Existing In The Bacterial Cells Is Achieved By Degrading RNA Released From Cells By RNase Added In MX1 Buffer. Degraded RNA Does Not Bind Well As Undegraded RNA To The Membrane In The Presence Of Chaotropic Salts, Thus Degraded RNA Is Washed Off With Wash Buffer (WN Buffer) Which Contains Chaotropic Salts, Whereas Plasmid DNA Is Still Bound To The Membrane And Is Then Eluted Without RNA Contamination. The Single Wash Buffer Provided In Other Kits Does Not Contain Chaotropic Salts As WN Buffer Does, Thus It Is Not Able To Remove Degraded RNA Bound To The Column. In This Case, Degraded RNA Will Be Co-Eluted With Plasmid DNA. Since RNA Is Degraded, An User Does Not See It By Agarose Gel Electrophoresis Analysis. Though Degraded RNA Does Not Affect Restriction Digestion And Sequencing Reaction, The Presence Of The Ribo-Oligonucleotides Interferes With Some Applications Such As Digestion Of Plasmid With BAL 31 Or Labeling Of The 5\u2019 Termini Of Restiction Enzyme Fragments Of The Plasmid With Bacteriophage T4 Polynucleotide Kinase. Further, The Presence Of Degraded RNA Leads To A False High OD260 Of The Plasmid Eluant (Degraded RNA Also Absorbs Light At Wavelength Of 260 Nm), Thus Misleading The Users That A High Plasmid Yield Is Obtained. The Presence Of Degraded RNA In The Plasmid DNA Solution Can Be Evidenced By OD260\/OD280 Ratio Higher Than 1.8. The Use Of Two Wash Buffers Provided In <a href=\"https:\/\/immunomart.medium.com\/title-agricultural-biotechnology-the-role-of-diagnostic-kits-and-reagents-359705cdbd4a\" target=\"_blank\" rel=\"noopener\">Immunoport&#8217;s<\/a> Kit Solves These Problems.<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Frequently Asked Questions for Plasmid DNA Extraction Why Eluted plasmid appeared degraded after storage for a period of time? When Degradation Appears, This Indicates That Nuclease The Possible Presence Of Nuclease In The Eluted Plasmid. There Are Several Things To Do: 1) Nuclease Cannot Be Completely Washed Off Especially When End+ E. Coli Host Strain [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"_acf_changed":false,"ep_exclude_from_search":false,"footnotes":""},"assasys":[],"class_list":["post-146600","page","type-page","status-publish","hentry"],"acf":[],"rankMath":{"parentDomain":"immunomart.com","noFollowDomains":[],"noFollowExcludeDomains":[],"noFollowExternalLinks":false,"featuredImageNotice":"The featured image should be at least 200 by 200 pixels to be picked up by Facebook and other social media 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